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TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines

© Guillaume Jacquemet · CC BY 4.0

TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines

Dmitry Ershov, Minh-Son Phan, Joanna W. Pylvänäinen, Stéphane U. Rigaud, Laure Le Blanc, Arthur Charles-Orszag, James R. W. Conway, Romain F. Laine, Nathan H. Roy, Daria Bonazzi, Guillaume Duménil, … +1 more, Jean-Yves Tinevez

Nature Methods · 2022 · doi:10.1038/s41592-022-01507-1Open access

TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.

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